A phylogenetic re-evaluation of Dothideomycetes
Editor(s): Conrad L. Schoch, Joseph W. Spatafora, H. Thorsten Lumbsch, Sabine M. Huhndorf, Kevin D. Hyde, Johannes Z. Groenewald and Pedro W. Crous
Details: 220 pp., fully illustrated with colour pictures (A4 format), paperback, 2009
Price: € 65,-

ISBN:978-90-70351-78-6

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This volume presents a re-evaluation of phylogenetic relationships within the class Dothideomycetes, which is by far the largest and arguably most phylogenetically diverse class within the largest fungal phylum, Ascomycota. This issue contains 10 papers, combining the efforts and data from a diverse group of researchers. Such a well-sampled phylogeny is especially important for comprehending how fungi have evolved as they shift ecological habitats and adapt to new environments and nutritional modes. A comprehensive phylogeny, derived from five genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families in Dothideomycetes, is presented. If required to delineate taxa in specific families, additional genes (ITS, β-tubulin) were sequenced. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. In total 78 novelties are introduced, including six families, 11 genera, 27 species, 33 new combinations and one new name. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of six dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.

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Download pdf A class-wide phylogenetic assessment of Dothideomycetes.
Schoch CL, Crous PW, Groenewald JZS, Boehm EWA, BurgessTI, Gruyter J De, Hoog GS De, Dixon LJ, Grube M, Gueidan C, Harada Y, Hatakeyama S, Hirayama K, Hosoya T, Huhndorf SM, Hyde KD, Jones EBG, Kohlmeyer J, Kruys Å, Li YM, Lücking R, Lumbsch HT, Marvanová L, Mbatchou JS, McVay AH, Miller AN, Mugambi GK, Muggia L, Nelsen MP, Nelson P, Owensby CA, Phillips AJL, Phongpaichit S, Pointing SB, Pujade-Renaud V, Raja HA, Rivas Plata E, Robbertse B, Ruibal C, Sakayaroj J, Sano T, Selbmann L, Shearer CA, Shirouzu T, Slippers B, Suetrong S, Tanaka K, Volkmann-Kohlmeyer B, Wingfield MJ, Wood AR, Woudenberg JHC, Yonezawa H, Zhang Y, Spatafora JW (2009). Studies in Mycology 64: 1–15.
Download pdf Phylogenetic lineages in the Capnodiales
Crous PW, Schoch CL, Hyde KD, Wood AR, Gueidan C, Hoog GS De, Groenewald JZ (2009). Studies in Mycology64: 17–47.
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A molecular phylogenetic reappraisal of the HysteriaceaeMytilinidiaceae and Gloniaceae (PleosporomycetidaeDothideomycetes) with keys to world species.
Boehm EWA, Mugambi GK, Miller AN, Huhndorf SM, Marincowitz S, Spatafora JW, Schoch CL (2009).  Studies in Mycology 64: 49–83.

Download pdf Multi-locus phylogeny of the Pleosporales: a taxonomic, ecological and evolutionary re-evaluation
Zhang Y, Schoch CL, Fournier J, Crous PW, Gruyter J De, Woudenberg JHC, Hirayama K, Tanaka K, Pointing SB, Spatafora JW, Hyde KD (2009). Studies in Mycology 64: 85–102.
Download pdf Molecular phylogenetics of PleosporalesMelanommataceae and Lophiostomataceae re-circumscribed (PleosporomycetidaeDothideomycetesAscomycota).
Mugambi GK, Huhndorf SM (2009). Studies in Mycology64: 103–121.
Download pdf Phylogeny of rock-inhabiting fungi related to Dothideomycetes.
Ruibal C, Gueidan C, Selbmann L, Gorbushina AA, Crous PW, Groenewald JZ, Muggia L, Grube M, Isola D, Schoch CL, Staley JT, Lutzoni F, Hoog GS De (2009). Studies in Mycology 64: 123–133.
Download pdf Unravelling the phylogenetic relationships of lichenised fungi in Dothideomyceta.
Nelsen MP, Lücking R, Grube M, Mbatchou JS, Muggia L, Rivas Plata E, Lumbsch HT (2009). Studies in Mycology64: 135–144.
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The molecular phylogeny of freshwater Dothideomycetes
Shearer CA, Raja HA, Miller AN, Nelson P, Tanaka K, Hirayama K, Marvanová L, Hyde KD, Zhang Z (2009) . Studies in Mycology 64: 145–153

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Molecular systematics of the marine Dothideomycetes
Suetrong S, Schoch CL, Spatafora JW, Kohlmeyer J, Volkmann-Kohlmeyer B, Sakayaroj J, Phongpaichit S, Tanaka K, Hirayama K, Jones EBG (2009). Studies in Mycology 64: 155–173.

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Molecular taxonomy of bambusicolous fungi: Tetraplosphaeriaceae, a new pleosporalean family with Tetraploa-like anamorphs, and notes on the phylogeny of selected species from bamboos
Tanaka K, Hirayama K, Yonezawa H, Hatakeyama S, Harada Y, Sano T, Shirouzu T, Hosoya T (2009).  Studies in Mycology 64: 175–209.

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